Tabulate cases for a condition by age and syndrome

calc_cc_by_age_syndrome(
d,
condition,
syndrome_names,
syndrome_values = NULL,
specimen_types = NULL,
sites = NULL
)

Arguments

d A data object obtained from load_data. A string specifying the condition to tabulate causal chain presence for. To list all possibilities, see valid_conditions. A vector specifying conditions to tabulate combinations of presence of for the given condition An optional vector of the same length of syndrome_names that specifies the mapping from the official condition names to the values to use for reporting. See example. An optional vector of specimen types to include in the calculation. If not provided, all specimen types will be used. See valid_specimen_types. An optional vector of site names to include in the tabulation. If not provided, all sites will be used. See valid_sites.

Examples

calc_cc_by_age_syndrome(mock,
condition = "Streptococcus pneumoniae",
syndrome_names = c(
"Lower respiratory infections",
"Meningitis/Encephalitis",
"Neonatal sepsis",
"Congenital infection"),
syndrome_values = c(
"Pneumonia",
"Meningitis",
"Sepsis",
"Sepsis")
)