Tabulate top pathogens associated with a condition by site of acquisition

calc_top_dcd_pathogens_by_acq(d, condition, age_groups = NULL, sites = NULL)

Arguments

d	A data object obtained from `load_data`.
condition	A string specifying the condition to tabulate causal chain presence for. To list all possibilities, see `valid_conditions`.
age_groups	Optional vector of age groups. See `valid_age_groups`.
sites	An optional vector of site names to include in the tabulation. If not provided, all sites will be used. See `valid_sites`.

Examples

calc_top_dcd_pathogens_by_acq(mock,
  condition = "Lower respiratory infections",
  age_groups = c(
    "Infant (28 days to less than 12 months)",
    "Child (12 months to less than 60 Months)")
)