Plot the percents of a computed CHAMPS table
heatmap_site_age( x, plot_title = "", plot_subtitle = "", include_text = "percent", color_limits = NULL )
A computed CHAMPS object that includes a numerator and denominator of counts.
is the title for the plot.
is the subtitle for the plot.
Whether to include the percentages "percent", or fraction "fraction". Defaults to NULL which is none.
maps to the limits argument in the fill scale of ggplot2. Defaults to NULL which is the max and min of the data. Specify the limits in proportions like c(0, 0.25) to have standard limits for multiple charts set to 0% to 25%.
mock_calc <- calc_cc_allcases_by_site_age(mock, condition = 'Streptococcus agalactiae') heatmap_site_age(mock_calc, include_text = "percent", plot_title = "TAC Results", plot_subtitle = "Streptococcus pneumoniae") heatmap_site_age(mock_calc, include_text = "fraction", plot_title = "TAC Results", plot_subtitle = "Streptococcus pneumoniae")